I wouldn't necessarily call it a lack of conscience, in fact, in some ways quite the opposite, but in this essay I present an interpretation of the autonomy of human beings versus structural design,

There are no hidden patterns., they're just a distraction and a reason to build on scientific discoveries. What's intrinsic in autonomy goes beyond awareness or perception and involves biological discrepancies, mainly in the stomach, so where your intuition and feelings lie.

The claimant of these conditions, or rather, person, suffering from these conditions, is under obligation that they are (what are so called client), to esure they are not murdered. Yet they can be locked up, harassed by the police and have their rights taken away. So they can have their lives taken away. As well s the previous owner(s) pressuring the victim into suicide.

Basically this is one definition of autonomy being taken away.

So where is the conscience when the person acting, relevantly, in other words unaware of the true nature of the alien world most of the time.

Well, I would argue that conscience is a part of the soul, and to reach beyond your own conscience, which you may still choose to ignore,  but even if, like most of us do, we keep ignoring it, the soul will always kick in.

and each time it does you become more resilient to the evil around you, and with some confidence, have a more powerful soul. Then if you can accept past mistakes and learn from them,
and grow a steady conscience too.